Update how pathogen is called

Now uses pathogen#infect()

vimrc

@@ -1,6 +1,5 @@
 " Use pathogen to use search for plug-ins
-call pathogen#runtime_append_all_bundles()
-call pathogen#helptags()
+call pathogen#infect()
 
 " Basics
 set t_Co=256        " Use 256 colors
@@ -95,7 +94,6 @@ filetype indent on   " load filetype plug-ins and indent settings
 " UI
 set showcmd         " show the command being typed
 set ruler           " Always show current positions along the bottom
-"set number          " turn on line numbers
 set relativenumber  " Use relative line numbers
 set numberwidth=4   " If we have over 9999 lines
 set hidden          " you can change buffer without saving